cellhub.tasks

This sub-module provides helper classes and functions for configuring and running the pipelines.

• parameters.py
  • Overview
  • Functions
• write_config_files()
• get_parameter_file()
• setup.py
• setup
  • setup.job_threads
  • setup.job_memory
  • setup.resources
  • setup.outname
  • setup.outdir
  • setup.indir
  • setup.inname
  • setup.log_file
  • setup.parse_mem()
  • setup.set_resources()
• api.py
  • Overview
  • Usage
  • Class and method documentation
• api
  • api.define_dataset()
  • api.register_dataset()
  • api.show()
  • api.reset_endpoint()
• profile.py
  • Usage
  • Code
• is_tool()
• cellbender.py
  • Overview
• anndata_from_h5()
• dict_from_h5()